Susztaklab Kidney Biobank

Our site hosts comprehensive kidney omics data to help understand kidney homeostasis and disease.

Welcome to the Susztaklab Kidney Biobank

The site is free to use, please cite our publications based on the user agreement.

eGFR GWAS (2.2 million) and ScoreCard New! Liu et al. In press	Human Kidney snATAC (Version 1) Sheng et al., Nature Genetics, 2021, N = 12,720 cells	Mouse Kidney scRNA-seq Atlas (UMAP) Park et al Science 2018
eGFR GWAS (1.5 million) and Prioritization Liu et al., Nature Genetics, 2022	Human Kidney snATAC (Version 2) Liu et al., Nature Genetics, 2022, N = 57,229 cells	Developing Mouse Kidney scRNAseq (UMAP) Miao and Balzer et al Nat. Commun. 2021
Human Kidney Expression QTL Atlases Qiu et al., Nature Medicine, 2018; Sheng et al., Nature Genetics, 2021; Liu et al., Nature Genetics, 2022	Human Kidney Disease snATAC (IGV) Abedini, Levinsohn et al., Nature Genetics, 2024 Yan et al. Nat. Commun. 2023	Developing Mouse Kidney snATACseq (IGV) Miao and Balzer et al., Nat. Commun. 2021
Human Kidney Protein QTL Atlas New! Hirohama et al.	Human Kidney Spatial Transcriptome Abedini, Levinsohn et al., Nature Genetics, 2024	scRNAseq of Mouse Acute Kidney Injury (IRI) Balzer et al Nat. Commun. 2022
Human Kidney Methylation QTL Atlas Liu et al., Nature Genetics, 2022	Human Kidney Single Cell Transcriptome (Susztak) Abedini, Levinsohn et al., Nature Genetics, 2024	scRNAseq of Mouse Kidney Fibrosis (UUO) Doke et al Nature Immunology 2022
Human Blood (CRIC) Methylation QTL Atlas Sheng et al PNAS 2019	Human Kidney Single Cell Transcriptome (Susztak & KPMP merged) Abedini, Levinsohn et al., Nature Genetics, 2024	snRNAseq and snATACseq of Rat Model of HTN and Fibrosis (DOCA Rats) Abedini et al., J Clin Invest, 2024
Human kidney Bulk Gene Expression and Disease (eGFR, fibrosis) Correlation Beckerman et al., eBiomedicine, 2015	Multispecies-Integrated Single-Cell Kidney Atlas (SISKA) New! Kloetzer et al.	snATACseq of Rat Model of HTN and Fibrosis (DOCA Rats) (IGV) Abedini et al., J Clin Invest, 2024
TRIDENT Transformative Research in Diabetic Nephropathy	Rodent - Human Gene Expression Coordination of Cellular Functions New! Kloetzer et al.	scRNAseq of Mouse Kidney Fibrosis (Folic acid nephropathy) Dhillon and Park et al., Cell Metabolism, 2021
Susztaklab PennMedicine website		Mouse kidney Bulk Gene Expression and disease correlation Hu et al pending
		Rat Diabetic Kidney Disease snRNA-seq (UMAP) Balzer et al., Cell Rep Med., 2023
		Mouse Kidney scRNA-seq Atlas Zhou et al., J Am Soc Nephrol., 2023

Publications on PubMed

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